PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G270700.1
Common NameB456_008G270700, LOC105765470
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 330aa    MW: 36109.1 Da    PI: 4.9049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G270700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-1395146155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YI++Lq
  Gorai.008G270700.1  95 QRMSHITVERNRRKQMNEHLSVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 146
                         79***************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.07E-1392150No hitNo description
SuperFamilySSF474591.16E-1793166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.26294145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-1195146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1395157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDDNLCEFSD EPEFVGEDDL FSIFESLDGL IDFPVPFTPL EEMTTATTAA AVGVGGGSAQ  60
KSTPLMESET EETSPKTKRQ KLGSLEETMN TDGPQRMSHI TVERNRRKQM NEHLSVLRSL  120
MPCFYVKRGD QASIIGGVVD YINELQQVLQ ALEAKKQRKV YSEVLSPRVV LSPRPSPLSP  180
RKPPLSPRLN LPISPRTPQP GSPYKPRLQK GYLSPTMAAS TSLEPSPTSS TSSVDNNNEL  240
VANSKSHVAD VEVKFSGPNL VLKTVSPRIP GQALKIISAL EELSLEILNV DIKTVDETML  300
NSFTIKIGIE CQLSAEELAQ QIQQTFGHC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195106RMSHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440031.10.0PREDICTED: transcription factor SPEECHLESS
SwissprotQ700C71e-105SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A0D2TDN40.0A0A0D2TDN4_G
STRINGGLYMA04G41710.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78952740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-78bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]